IL_4V7V_377

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CCG*CGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_377 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2843

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V7V|1|DA|C|183
4V7V|1|DA|C|184
4V7V|1|DA|G|185
*
4V7V|1|DA|C|211
4V7V|1|DA|G|212
4V7V|1|DA|A|213
4V7V|1|DA|G|214

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34