IL_4V7V_388

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V7V|1|CA|U|244, 4V7V|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_388 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1237

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V7V|1|CA|G|242
4V7V|1|CA|A|243
4V7V|1|CA|U|244
4V7V|1|CA|U|245
4V7V|1|CA|A|246
4V7V|1|CA|G|247
*
4V7V|1|CA|C|277
4V7V|1|CA|G|278
4V7V|1|CA|A|279
4V7V|1|CA|C|280
4V7V|1|CA|G|281
4V7V|1|CA|A|282
4V7V|1|CA|U|283
4V7V|1|CA|C|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17