IL_4V7W_054

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_054 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.187

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7W|1|AA|C|1262
4V7W|1|AA|C|1263
4V7W|1|AA|C|1264
*
4V7W|1|AA|G|1271
4V7W|1|AA|G|1272
4V7W|1|AA|G|1273

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S19

Chain AU

30S ribosomal protein Thx