3D structure

PDB id
4V7W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7W_208 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0695
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4V7W|1|CA|G|887
4V7W|1|CA|G|888
4V7W|1|CA|A|889
4V7W|1|CA|G|890
4V7W|1|CA|U|891
4V7W|1|CA|A|892
4V7W|1|CA|C|893
4V7W|1|CA|G|894
*
4V7W|1|CA|U|905
4V7W|1|CA|G|906
4V7W|1|CA|A|907
4V7W|1|CA|A|908
4V7W|1|CA|A|909
4V7W|1|CA|C|910

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CL
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4049 s
Application loaded.