IL_4V7W_271

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V7W|1|DA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_271 not in the Motif Atlas

Homologous match to IL_7RQB_036

Geometric discrepancy: 0.0592

The information below is about IL_7RQB_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V7W|1|DA|C|998
4V7W|1|DA|U|999
4V7W|1|DA|A|1000
4V7W|1|DA|A|1001
4V7W|1|DA|G|1002
*
4V7W|1|DA|C|1153
4V7W|1|DA|G|1154
4V7W|1|DA|A|1155
4V7W|1|DA|A|1156
4V7W|1|DA|G|1157

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DU

50S ribosomal protein L20