IL_4V7W_279

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V7W|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_279 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1082

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V7W|1|DA|C|1208
4V7W|1|DA|G|1209
4V7W|1|DA|A|1210
4V7W|1|DA|U|1211
4V7W|1|DA|G|1212
4V7W|1|DA|A|1213
4V7W|1|DA|A|1214
4V7W|1|DA|G|1215
*
4V7W|1|DA|U|1234
4V7W|1|DA|G|1235
4V7W|1|DA|G|1236
4V7W|1|DA|A|1237
4V7W|1|DA|G|1238

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20