IL_4V7X_364

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGU*AUACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7X_364 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3303

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_46387.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V7X|1|CA|C|596
4V7X|1|CA|G|597
4V7X|1|CA|U|598
*
4V7X|1|CA|A|640
4V7X|1|CA|U|641
4V7X|1|CA|A|642
4V7X|1|CA|C|643
4V7X|1|CA|G|644

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CQ

30S ribosomal protein S17