3D structure

PDB id
4V7Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4V7Y|1|AA|U|244, 4V7Y|1|AA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7Y_013 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0769
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4V7Y|1|AA|C|242
4V7Y|1|AA|A|243
4V7Y|1|AA|U|244
4V7Y|1|AA|C|245
4V7Y|1|AA|A|246
4V7Y|1|AA|G|247
*
4V7Y|1|AA|C|277
4V7Y|1|AA|G|278
4V7Y|1|AA|A|279
4V7Y|1|AA|C|280
4V7Y|1|AA|G|281
4V7Y|1|AA|A|282
4V7Y|1|AA|C|283
4V7Y|1|AA|G|284

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AQ
30S ribosomal protein S17

Coloring options:


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