IL_4V7Y_301

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V7Y|1|DA|A|1938, 4V7Y|1|DA|U|1944, 4V7Y|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_301 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.12

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V7Y|1|DA|C|1934
4V7Y|1|DA|G|1935
4V7Y|1|DA|A|1936
4V7Y|1|DA|A|1937
4V7Y|1|DA|A|1938
4V7Y|1|DA|U|1939
4V7Y|1|DA|U|1940
4V7Y|1|DA|C|1941
4V7Y|1|DA|C|1942
4V7Y|1|DA|U|1943
4V7Y|1|DA|U|1944
4V7Y|1|DA|G|1945
*
4V7Y|1|DA|C|1961
4V7Y|1|DA|C|1962
4V7Y|1|DA|U|1963
4V7Y|1|DA|G|1964

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2