IL_4V7Y_338

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_338 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2128

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V7Y|1|DB|U|80
4V7Y|1|DB|G|81
4V7Y|1|DB|G|82
*
4V7Y|1|DB|C|95
4V7Y|1|DB|U|96
4V7Y|1|DB|G|97

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25