IL_4V7Z_351

3D structure

PDB id

4V7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Z_351 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.2131

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V7Z|1|DB|C|28
4V7Z|1|DB|A|29
4V7Z|1|DB|C|30
*
4V7Z|1|DB|G|54
4V7Z|1|DB|U|55
4V7Z|1|DB|G|56

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18