IL_4V80_013

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V80|1|AA|U|244, 4V80|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_013 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.0869

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V80|1|AA|G|242
4V80|1|AA|A|243
4V80|1|AA|U|244
4V80|1|AA|U|245
4V80|1|AA|A|246
4V80|1|AA|G|247
*
4V80|1|AA|C|277
4V80|1|AA|G|278
4V80|1|AA|A|279
4V80|1|AA|C|280
4V80|1|AA|G|281
4V80|1|AA|A|282
4V80|1|AA|U|283
4V80|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17