IL_4V80_039

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_039 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.0608

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V80|1|AA|G|887
4V80|1|AA|G|888
4V80|1|AA|A|889
4V80|1|AA|G|890
4V80|1|AA|U|891
4V80|1|AA|A|892
4V80|1|AA|C|893
4V80|1|AA|G|894
*
4V80|1|AA|U|905
4V80|1|AA|A|906
4V80|1|AA|A|907
4V80|1|AA|A|908
4V80|1|AA|A|909
4V80|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12