IL_4V80_183

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

4V80|1|CA|G|64, 4V80|1|CA|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_183 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.1277

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V80|1|CA|C|63
4V80|1|CA|G|64
4V80|1|CA|A|65
4V80|1|CA|A|66
*
4V80|1|CA|U|103
4V80|1|CA|G|104

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20