IL_4V80_202

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_202 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1333

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V80|1|CA|G|450
4V80|1|CA|A|451
4V80|1|CA|A|452
4V80|1|CA|G|453
4V80|1|CA|G|454
4V80|1|CA|G|455
*
4V80|1|CA|C|477
4V80|1|CA|A|478
4V80|1|CA|U|479
4V80|1|CA|U|480
4V80|1|CA|G|481
4V80|1|CA|A|482
4V80|1|CA|C|483

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16