IL_4V83_023

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V83|1|AA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_023 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0809

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V83|1|AA|C|569
4V83|1|AA|G|570
4V83|1|AA|U|571
4V83|1|AA|A|572
4V83|1|AA|A|573
4V83|1|AA|A|574
4V83|1|AA|G|575
*
4V83|1|AA|C|880
4V83|1|AA|G|881

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17