IL_4V83_063

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_063 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.0013

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V83|1|AV|C|6153
4V83|1|AV|U|6154
4V83|1|AV|C|6155
*
4V83|1|AV|G|6173
4V83|1|AV|U|6174
4V83|1|AV|G|6175

Current chains

Chain AV

domain 3 of PSIC IGR IRES RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain BA

Large subunit ribosomal RNA; LSU rRNA