IL_4V83_158

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V83|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_158 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0613

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V83|1|BA|U|2636
4V83|1|BA|U|2637
4V83|1|BA|G|2638
4V83|1|BA|A|2639
4V83|1|BA|G|2640
*
4V83|1|BA|C|2774
4V83|1|BA|A|2775
4V83|1|BA|A|2776
4V83|1|BA|G|2777
4V83|1|BA|A|2778
4V83|1|BA|U|2779
4V83|1|BA|G|2780
4V83|1|BA|A|2781
4V83|1|BA|G|2782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13