IL_4V83_223

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V83|1|CA|U|1257, 4V83|1|CA|U|1278, 4V83|1|CA|A|1280, 4V83|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_223 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2968

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V83|1|CA|G|1255
4V83|1|CA|A|1256
4V83|1|CA|U|1257
4V83|1|CA|G|1258
*
4V83|1|CA|C|1277
4V83|1|CA|U|1278
4V83|1|CA|A|1279
4V83|1|CA|A|1280
4V83|1|CA|U|1281
4V83|1|CA|C|1282

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z