IL_4V83_227

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_227 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1336

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V83|1|CA|G|1401
4V83|1|CA|C|1402
4V83|1|CA|C|1403
4V83|1|CA|C|1404
*
4V83|1|CA|G|1497
4V83|1|CA|U|1498
4V83|1|CA|A|1499
4V83|1|CA|A|1500
4V83|1|CA|C|1501

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CV

domain 3 of PSIC IGR IRES RNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA