IL_4V83_236

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V83|1|CV|C|6155
4V83|1|CV|A|6156
4V83|1|CV|A|6157
*
4V83|1|CV|U|6172
4V83|1|CV|G|6173

Current chains

Chain CV

domain 3 of PSIC IGR IRES RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CM

30S ribosomal protein S13

Chain DA

Large subunit ribosomal RNA; LSU rRNA