Motif IL_57267.1 Version IL_57267.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7KGA_006 | 7KGA | 0.5038 | 0 | Single stack bend | B | Flavivirus DB element | A | 37 | C | 38 | U | 39 | * | A | 15 | U | 16 | cWW | cWW | |
| 2 | IL_9DFE_057 | 9DFE | 0.3999 | 0 | Single stack bend | 1A | LSU rRNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | ncWW | cWW |
| 3 | IL_5VSU_003 | 5VSU | 0.4144 | 0 | Single stack bend | I | U6 snRNA | A | 75 | A | 76 | G | 77 | * | C | 69 | U | 70 | cWW | cWW | |
| 4 | IL_8GLP_141 | 8GLP | 0.2004 | 1 | L5 | LSU rRNA | G | 4347 | A | 4348 | C | 4350 | * | G | 4364 | C | 4365 | cWW | cWW | ||
| 5 | IL_9H3G_115 | 9H3G | 0.0000 | 1 | A | LSU rRNA | G | 2769 | A | 2770 | C | 2772 | * | G | 2786 | C | 2787 | cWW | cWW | ||
| 6 | IL_9AXU_095 | 9AXU | 0.2176 | 1 | 2 | LSU rRNA | U | 2865 | U | 2866 | C | 2868 | * | G | 2882 | A | 2883 | ncWW | ncWW | cWW | |
| 7 | IL_9UJU_003 | 9UJU | 0.2517 | 0 | D | K10 TLS | C | 38 | A | 39 | A | 40 | * | U | 9 | G | 10 | ncWW | cWW | ||
| 8 | IL_4V83_236 | 4V83 | 0.3371 | 0 | Single stack bend | CV | domain 3 of PSIC IGR IRES RNA | C | 6155 | A | 6156 | A | 6157 | * | U | 6172 | G | 6173 | cWW | cWW | |
| 9 | IL_5O6U_004 | 5O6U | 0.4128 | 0 | H+I | non-target DNA + target DNA | DC | 3 | DC | 4 | DG | 5 | * | DC | 24 | DG | 25 | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACC*GC | 2 |
| CAA*UG | 2 |
| ACU*AU | 1 |
| GAG*CC | 1 |
| AAG*CU | 1 |
| UUCC*GA | 1 |
| CCG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 4 |
| C* | 2 |
| AC* | 2 |
| UC* | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Single stack bend (4)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.20 | Avg 0.37 | Max 0.65
Coloring options: