IL_4V83_338

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_338 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.106

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V83|1|DA|U|2847
4V83|1|DA|G|2848
4V83|1|DA|U|2849
4V83|1|DA|A|2850
4V83|1|DA|A|2851
4V83|1|DA|G|2852
*
4V83|1|DA|U|2865
4V83|1|DA|U|2866
4V83|1|DA|G|2867
4V83|1|DA|A|2868
4V83|1|DA|G|2869

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19