IL_4V83_349

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V83|1|BA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_349 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1195

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V83|1|BA|C|844
4V83|1|BA|G|845
4V83|1|BA|C|846
4V83|1|BA|U|847
4V83|1|BA|G|848
4V83|1|BA|A|849
4V83|1|BA|C|850
*
4V83|1|BA|G|928
4V83|1|BA|G|929
4V83|1|BA|U|930
4V83|1|BA|G|931
4V83|1|BA|G|932
4V83|1|BA|A|933
4V83|1|BA|G|934

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L30