IL_4V84_001

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGA*UAC

Length

7 nucleotides

Bulged bases

4V84|1|AA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_001 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2623

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V84|1|AA|G|29
4V84|1|AA|U|30
4V84|1|AA|G|31
4V84|1|AA|A|32
*
4V84|1|AA|U|552
4V84|1|AA|A|553
4V84|1|AA|C|554

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12