IL_4V84_014

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V84|1|AA|U|244, 4V84|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_014 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0728

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V84|1|AA|C|242
4V84|1|AA|A|243
4V84|1|AA|U|244
4V84|1|AA|C|245
4V84|1|AA|A|246
4V84|1|AA|G|247
*
4V84|1|AA|C|277
4V84|1|AA|G|278
4V84|1|AA|A|279
4V84|1|AA|C|280
4V84|1|AA|G|281
4V84|1|AA|A|282
4V84|1|AA|C|283
4V84|1|AA|G|284

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17