IL_4V84_035

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_035 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0757

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V84|1|AA|G|887
4V84|1|AA|G|888
4V84|1|AA|A|889
4V84|1|AA|G|890
4V84|1|AA|U|891
4V84|1|AA|A|892
4V84|1|AA|C|893
4V84|1|AA|G|894
*
4V84|1|AA|U|905
4V84|1|AA|G|906
4V84|1|AA|A|907
4V84|1|AA|A|908
4V84|1|AA|A|909
4V84|1|AA|C|910

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12