IL_4V84_036

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4V84|1|AA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_036 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.286

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V84|1|AA|U|921
4V84|1|AA|G|922
4V84|1|AA|A|923
*
4V84|1|AA|U|1393
4V84|1|AA|A|1394
4V84|1|AA|C|1395
4V84|1|AA|A|1396

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AE

30S ribosomal protein S5