IL_4V84_048

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V84|1|AA|C|1200, 4V84|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_048 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.166

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V84|1|AA|G|1057
4V84|1|AA|G|1058
*
4V84|1|AA|U|1199
4V84|1|AA|C|1200
4V84|1|AA|A|1201
4V84|1|AA|G|1202
4V84|1|AA|C|1203

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z