IL_4V84_060

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V84|1|AA|C|1400, 4V84|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_060 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0987

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V84|1|AA|C|1399
4V84|1|AA|C|1400
4V84|1|AA|G|1401
*
4V84|1|AA|C|1501
4V84|1|AA|A|1502
4V84|1|AA|A|1503
4V84|1|AA|G|1504

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AV

RNA (34-MER)