IL_4V84_069

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUU,AAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_069 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1066

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V84|1|AV|A|6178
4V84|1|AV|U|6179
4V84|1|AV|U|6180
*
4V84|1|AV|A|6196
4V84|1|AV|A|6197
4V84|1|AV|U|6198

Current chains

Chain AV

RNA (34-MER)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein S13

Chain BA

Large subunit ribosomal RNA; LSU rRNA