IL_4V84_088

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

4V84|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_088 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.1133

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V84|1|BA|C|288
4V84|1|BA|A|289
4V84|1|BA|G|290
*
4V84|1|BA|U|350
4V84|1|BA|G|351
4V84|1|BA|G|352
4V84|1|BA|G|353

Current chains

Chain BA

23S ribosomal RNA

Nearby chains