IL_4V84_090

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V84|1|BA|U|504, 4V84|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_090 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0741

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V84|1|BA|G|481
4V84|1|BA|A|482
4V84|1|BA|A|483
4V84|1|BA|C|484
*
4V84|1|BA|G|496
4V84|1|BA|A|497
4V84|1|BA|G|498
4V84|1|BA|U|499
4V84|1|BA|G|500
4V84|1|BA|A|501
4V84|1|BA|A|502
4V84|1|BA|A|503
4V84|1|BA|U|504
4V84|1|BA|A|505
4V84|1|BA|G|506
4V84|1|BA|A|507
4V84|1|BA|G|508
4V84|1|BA|C|509

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24