IL_4V84_159

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_159 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.245

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V84|1|BA|U|2098
4V84|1|BA|U|2099
4V84|1|BA|G|2100
*
4V84|1|BA|U|2189
4V84|1|BA|G|2190
4V84|1|BA|G|2191

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BH

50S ribosomal protein L9