IL_4V84_162

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCC*GGC

Length

7 nucleotides

Bulged bases

4V84|1|BA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_162 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3687

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V84|1|BA|G|2400
4V84|1|BA|U|2401
4V84|1|BA|C|2402
4V84|1|BA|C|2403
*
4V84|1|BA|G|2414
4V84|1|BA|G|2415
4V84|1|BA|C|2416

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L33

Chain B5

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15