IL_4V84_211

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V84|1|CA|A|532, 4V84|1|CA|U|534, 4V84|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_211 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.3867

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V84|1|CA|G|515
4V84|1|CA|U|516
4V84|1|CA|G|517
4V84|1|CA|C|518
4V84|1|CA|C|519
4V84|1|CA|A|520
4V84|1|CA|G|521
*
4V84|1|CA|C|528
4V84|1|CA|G|529
4V84|1|CA|G|530
4V84|1|CA|U|531
4V84|1|CA|A|532
4V84|1|CA|A|533
4V84|1|CA|U|534
4V84|1|CA|A|535
4V84|1|CA|C|536

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12