IL_4V84_219

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V84|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_219 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1139

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V84|1|CA|G|662
4V84|1|CA|A|663
4V84|1|CA|G|664
4V84|1|CA|A|665
4V84|1|CA|G|666
*
4V84|1|CA|U|740
4V84|1|CA|G|741
4V84|1|CA|G|742
4V84|1|CA|U|743

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18