IL_4V84_221

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V84|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_221 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.11

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V84|1|CA|G|683
4V84|1|CA|A|684
4V84|1|CA|G|685
4V84|1|CA|U|686
4V84|1|CA|A|687
4V84|1|CA|G|688
*
4V84|1|CA|C|699
4V84|1|CA|G|700
4V84|1|CA|C|701
4V84|1|CA|A|702
4V84|1|CA|G|703
4V84|1|CA|A|704
4V84|1|CA|U|705
4V84|1|CA|A|706
4V84|1|CA|C|707

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA