IL_4V84_228

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_228 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2843

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V84|1|CA|G|945
4V84|1|CA|A|946
*
4V84|1|CA|U|1235
4V84|1|CA|A|1236
4V84|1|CA|C|1237

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx

Chain CV

RNA (34-MER)