IL_4V84_230

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_230 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2952

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V84|1|CA|U|952
4V84|1|CA|G|953
4V84|1|CA|G|954
*
4V84|1|CA|C|1226
4V84|1|CA|A|1227
4V84|1|CA|C|1228
4V84|1|CA|A|1229

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19

Chain CV

RNA (34-MER)