IL_4V84_239

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_239 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1536

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V84|1|CA|G|1061
4V84|1|CA|U|1062
4V84|1|CA|C|1063
*
4V84|1|CA|G|1193
4V84|1|CA|U|1194
4V84|1|CA|C|1195

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CE

30S ribosomal protein S5

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z