IL_4V84_276

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V84|1|DA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_276 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1566

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V84|1|DA|C|280
4V84|1|DA|G|281
4V84|1|DA|A|282
4V84|1|DA|A|283
4V84|1|DA|U|284
*
4V84|1|DA|A|357
4V84|1|DA|U|358
4V84|1|DA|A|359
4V84|1|DA|G|360

Current chains

Chain DA

23S ribosomal RNA

Nearby chains