IL_4V84_331

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V84|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_331 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V84|1|DA|A|1669
4V84|1|DA|C|1670
4V84|1|DA|U|1671
4V84|1|DA|C|1672
4V84|1|DA|U|1673
4V84|1|DA|G|1674
*
4V84|1|DA|C|1990
4V84|1|DA|U|1991
4V84|1|DA|G|1992
4V84|1|DA|U|1993

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L14