IL_4V84_341
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4V84|1|DA|A|1938, 4V84|1|DA|U|1944, 4V84|1|DA|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V84_341 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1204
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
4V84|1|DA|C|1934
4V84|1|DA|G|1935
4V84|1|DA|A|1936
4V84|1|DA|A|1937
4V84|1|DA|A|1938
4V84|1|DA|U|1939
4V84|1|DA|U|1940
4V84|1|DA|C|1941
4V84|1|DA|C|1942
4V84|1|DA|U|1943
4V84|1|DA|U|1944
4V84|1|DA|G|1945
*
4V84|1|DA|C|1961
4V84|1|DA|C|1962
4V84|1|DA|U|1963
4V84|1|DA|G|1964
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
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