IL_4V84_356

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_356 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.133

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V84|1|DA|C|2466
4V84|1|DA|C|2467
4V84|1|DA|G|2468
4V84|1|DA|A|2469
4V84|1|DA|G|2470
*
4V84|1|DA|C|2480
4V84|1|DA|G|2481
4V84|1|DA|G|2482
4V84|1|DA|C|2483
4V84|1|DA|G|2484

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25