IL_4V84_371

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_371 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1248

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V84|1|DA|U|2847
4V84|1|DA|G|2848
4V84|1|DA|U|2849
4V84|1|DA|A|2850
4V84|1|DA|A|2851
4V84|1|DA|G|2852
*
4V84|1|DA|U|2865
4V84|1|DA|U|2866
4V84|1|DA|G|2867
4V84|1|DA|A|2868
4V84|1|DA|G|2869

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19