IL_4V84_398

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_398 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V84|1|CA|G|673
4V84|1|CA|G|674
4V84|1|CA|A|675
4V84|1|CA|A|676
4V84|1|CA|U|677
*
4V84|1|CA|G|713
4V84|1|CA|G|714
4V84|1|CA|A|715
4V84|1|CA|A|716
4V84|1|CA|C|717

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CK

30S ribosomal protein S11

Chain CR

30S ribosomal protein S18

Chain DC

50S ribosomal protein L2