IL_4V84_404

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_404 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1453

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V84|1|CA|C|1303
4V84|1|CA|G|1304
4V84|1|CA|G|1305
4V84|1|CA|A|1306
4V84|1|CA|U|1307
4V84|1|CA|U|1308
*
4V84|1|CA|A|1329
4V84|1|CA|U|1330
4V84|1|CA|G|1331
4V84|1|CA|A|1332
4V84|1|CA|A|1333
4V84|1|CA|G|1334

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx