IL_4V85_017

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V85|1|AA|U|244, 4V85|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_017 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.0902

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V85|1|AA|G|242
4V85|1|AA|A|243
4V85|1|AA|U|244
4V85|1|AA|U|245
4V85|1|AA|A|246
4V85|1|AA|G|247
*
4V85|1|AA|C|277
4V85|1|AA|G|278
4V85|1|AA|A|279
4V85|1|AA|C|280
4V85|1|AA|G|281
4V85|1|AA|A|282
4V85|1|AA|U|283
4V85|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12 1

Chain AQ

30S ribosomal protein S17