IL_4V85_053

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUUG,CAAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_053 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.3643

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V85|1|AA|U|1121
4V85|1|AA|U|1122
4V85|1|AA|U|1123
4V85|1|AA|G|1124
*
4V85|1|AA|C|1149
4V85|1|AA|A|1150
4V85|1|AA|A|1151
4V85|1|AA|A|1152

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10